Seminar: Aktuelle Themen der Bioinformatik

Dirk Metzler, Sommersemester 2004
Donnerstag von 14 bis 16 Uhr, Raum 307
Zuordnung: ThBi, PTBi;



Datum Thema    
29.04.2004 Patrick Pfeffer:    
  Prediction of Protein Function and Motion Planning to Analyze Folding Kinetics    
  Amato, N. M., Dill, K. A., and Song, G. (2003). Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structures. Journal of Computional Biology, 10(3/4):239–255. PDF Vortrag Ausarbeitung
  Deng, M., Zhang, K., Mehta, S., Chen, T., and Sun, F. (2003). Prediction of protein function using protein-protein interaction data. Journal of Computional Biology, 10(6):947–960. PDF Vortrag Ausarbeitung
06.05.2004 Kai Scheiffele:    
  An Eulerian Path Approach to Global Multiple Alignment for DNA Sequencs    
  Zhang, Y. and Waterman, M. S. (2003). An eulerian path approach to global multiple alignment for dna sequencs. Journal of Computional Biology, 10(6):803–819. PDF Vortrag Ausarbeitung
13.05.2004 Yusuf Tanrickulu / Ewgenij Proschak:    
  Introduction to microarray gene expression data    
  Huber, W., von Heydenbreck, A., and Vingron, M. (2003b). Analysis of microarray gene expression data. Number 1/3 in 2, Chichester, UK. PDF    
  Huber, W., von Heydenbreck, A., S¨ultmann, H., Poustka, A., and Vingron, M. (2002). Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18(1):96–104. PDF    
  Huber, W., von Heydenbreck, A., S¨ultmann, H., Poustka, A., and Vingron, M. (2003a). Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology, 2(1). Art. 3. PDF Vortrag  
20.05.2004 Feiertag    
27.05.2004 Yusuf Tanrickulu / Ewgenij Proschak:    
  Variance stabilization and parameter estimation for the calibration and variance stabilization of microarray data    
  Huber, W., von Heydenbreck, A., S¨ultmann, H., Poustka, A., and Vingron, M. (2002). Variance stabbilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18(1):96–104. PDF    
  Huber, W., von Heydenbreck, A., S¨ultmann, H., Poustka, A., and Vingron, M. (2003a). Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology, 2(1). Art. 3. PDF Vortrag Ausarbeitung
03.06.2004 Frank Abromeit:    
  Linear Time Algorihms for Finding and Representing all Tandem Repeats in a String    
  Gusfield, D. and Stoye, J. (1998). Linear time algorithms for finding and representing all the tandem repeats in a string. Technical Report CSE-98-4, Department of Computer Science, UC Davis. PDF Vortrag Ausarbeitung
10.06.2004 Feiertag    
17.06.2004 Florian Schwarte:    
  Classification and Accelerating Screening of Protein Structures with SVM and a Graph Theoretical Approach    
  Zhang, S.-W., Pan, Q., Zhang, H., Zhang, Y.-L., and Wang, H.-Y. (2003). Classification of protein quaternary structure with support vector machine. Bioinformatics, 19(18):2390–2396. PDF Vortrag Ausarbeitung
  Fr¨ommel, C., Gille, C., Goede, A., Gr¨opl, C., Hougardy, S., Nierhoff, T., and Robert Preissner, M. T. (2003). Accelerating screening of 3d protein data with a graph theoretical approach. Bioinformatics, 19(16):2112–2121. PS Vortrag Ausarbeitung
24.06.2004 Matthias Rühl:    
  Algorithmic Complexity of Protein Identification: Combinatorics of Weighted Strings    
  Cieliebak, M., Erlebach, T., Liptak, Z., Stoye, J., and EmoWelzl (2004). Algorithmic complexity of protein identification: Combinatorics of weighted strings. Discrete Applied Mathematics, 137(1):27–46. PDF Vortrag Ausarbeitung
01.07.2004 Timo Drick:    
  Pseudoknots in RNA Secondary Structur    
  Lyngs, R. and Pedersen, C. (2000). Pseudoknots in rna secondary structures. PDF Vortrag Ausarbeitung
08.07.2004 Martin Löwer:    
  On the Complexity of Fundamental Computational Problems in Pedigree Analysis    
  Piccolboni, A. and Gusfield, D. (2003). On the complexity of fundamental computational problems in pedigree analysis. Journal of Computional Biology, 10(5):763–773. PDF Vortrag Ausarbeitung
15.07.2004 Andre Brück:    
  MCMC genome rearrangement    
  Miklos, I. (2003). Mcmc genome rearrangement. Bioinformatics, 19(2):130–137. PDF Vortrag Ausarbeitung



Lin Himmelmann ,IMPRESSUM
Last modified: Wed Apr 28 17:20:48 CEST 2004