Seminar: Aktuelle Themen der Bioinformatik

Dirk Metzler, Sommersemester 2006
S; 2 SWS; Schein; Zuordnung: ThBI, PTBI;
Mi, 14:00 - 16:00, RM 11-15 / 9;
Do, 10:00 - 12:00, RM 11-15 / 9;



  Phylogenetics    
31.05.2006  Nickolay Todoroff Vortrag Ausarbeitung
  On Distances between Phylogenetic Trees. DasGupta; He; Jiang; Li; Tromp & Zhang SODA: ACM-SIAM Symposium on Discrete Algorithms (A Conference on Theoretical and Experimental Analysis of Discrete Algorithms), 1997, 427-436    
  Computing Distances between Evolutionary Trees. Handbook of Combinatorial Optimization Bhaskar DasGupta, X.H. & Zhang, L. Du, D.Z. & Pardalos, P. (ed.) , Kluwer Academic Publishers, 1998, 2, 35-76    
  On computing the nearest neighbor interchange distance. DasGupta, B.; He, X.; Jiang, T.; Li, M.; Tromp, J. & Zhang, L. 1997    
  On the nearest neighbour interchange distance between evolutionary trees. Li, M.; Tromp, J. & Zhang, L. J Theor Biol, 1996, 182, 463-467    
  DNA Gene Evolution    
7.06.2006  Baerbel Lasitschka Vortrag Ausarbeitung
  Unicyclic Networks: Compatibility and Enumeration. Charles Semple and Mike Steel IEEE/ACM Transactions on Computational Biology and Bioinformatics Volume 3, Number 1, January, 2006    
  IQPNNI: Moving Fast Through Tree Space and Stopping in Time. Mol Biol Evol. 2004 Aug;21(8):1565-71.    
  RNA Secondary Structure    
21.06.2006  Timon Ottmar Vortrag Ausarbeitung
  Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs. Meyer, I.M. & Miklós, I. Nucleic Acids Res, 2005, 33, 6338-6348    
  A grammatical theory for the conformational changes of simple helix bundles. Chiang, D.; Joshi, A.K. & Dill, K.A. J Comput Biol, 2006, 13, 21-42    
  Using motion planning to study RNA folding kinetics. Tang, X.; Kirkpatrick, B.; Thomas, S.; Song, G. & Amato, N.M. J Comput Biol, 2005, 12, 862-881    
  DNA Genome Rearrangement    
28.06.2006  Florian Roersch Vortrag Ausarbeitung
  Identifying conserved gene clusters in the presence of homology families. He, X. & Goldwasser, M.H. J Comput Biol, 2005, 12, 638-656    
  Chromosomal breakpoint reuse in genome sequence rearrangement. Sankoff, D. & Trinh, P. J Comput Biol, 2005, 12, 812-821    




Lin Himmelmann ,IMPRESSUM
Last modified: Wed Sep 27 17:20:48 CEST 2006